AMC_CRC_clinical |
Data used in the package DeSousa2013 |
AMC_sample_head |
Data used in the package DeSousa2013 |
buildClassifier |
Build a gene expression based classifier |
cents |
Data used in the package DeSousa2013 |
clu.pred |
Data used in the package DeSousa2013 |
clus |
Data used in the package DeSousa2013 |
clus.f |
Data used in the package DeSousa2013 |
compGapStats |
Computing Gap statistics to identify the optimal number of subtypes |
conClust |
Consensus clustering |
CRCPipeLine |
Pipeline function for De Sousa 2013 |
data4surv |
Data used in the package DeSousa2013 |
DeSousa2013 |
Pipeline function for De Sousa 2013 |
diffGenes |
Data used in the package DeSousa2013 |
diffGenes.f |
Data used in the package DeSousa2013 |
err |
Data used in the package DeSousa2013 |
figClassify |
Classifying the AMC samples |
figGAP |
Computing Gap statistics to identify the optimal number of subtypes |
figKM |
Prognosis of the three subtypes in the AMC data set |
figPAMCV |
Build a gene expression based classifier |
figSilh |
Filter colon cancer samples by Silhouette width |
filterDiffGenes |
Select the most predictive genes from differential genes |
filterSamples |
Filter colon cancer samples by Silhouette width |
findDiffGenes |
Search for differential genes between subtypes |
gapsmat |
Data used in the package DeSousa2013 |
gapsSE |
Data used in the package DeSousa2013 |
gclu.f |
Data used in the package DeSousa2013 |
ge.all |
Data used in the package DeSousa2013 |
geneExpPre |
Preprocessing of the AMC-AJCCII-90 microarray data |
getCentroids |
Retrieve centroids of a PAM classifier |
nam.ord |
Data used in the package DeSousa2013 |
pam.rslt |
Data used in the package DeSousa2013 |
pamClassify |
Classifying the AMC samples |
pbs2unigenes |
Generate a mapping file between probesets and unique gene symbols |
pred |
Data used in the package DeSousa2013 |
progAMC |
Prognosis of the three subtypes in the AMC data set |
sdat |
Data used in the package DeSousa2013 |
sdat.f |
Data used in the package DeSousa2013 |
sdat.sig |
Data used in the package DeSousa2013 |
selPbs |
Data used in the package DeSousa2013 |
selTopVarGenes |
Select top variable probesets |
signature |
Data used in the package DeSousa2013 |
silh |
Data used in the package DeSousa2013 |
surv |
Data used in the package DeSousa2013 |
survstats |
Data used in the package DeSousa2013 |
thresh |
Data used in the package DeSousa2013 |
uniGenes |
Data used in the package DeSousa2013 |