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| chipenrich.data-package | Datasets required for the chipenrich package |
| chipenrich.data | Datasets required for the chipenrich package |
| example_datasets | List ChIP-seq peak example datasets |
| genes.dme | genes.dme |
| genes.hsa | genes.hsa |
| genes.mmu | genes.mmu |
| genes.rno | genes.rno |
| GeneSet-class | Class '"GeneSet"' |
| geneset.biocarta_pathway.hsa | geneset.biocarta_pathway.hsa |
| geneset.biocarta_pathway.mmu | geneset.biocarta_pathway.mmu |
| geneset.biocarta_pathway.rno | geneset.biocarta_pathway.rno |
| geneset.cytoband.hsa | geneset.cytoband.hsa |
| geneset.drug_bank.hsa | geneset.drug_bank.hsa |
| geneset.drug_bank.mmu | geneset.drug_bank.mmu |
| geneset.drug_bank.rno | geneset.drug_bank.rno |
| geneset.ehmn_pathway_gene.hsa | geneset.ehmn_pathway_gene.hsa |
| geneset.ehmn_pathway_gene.mmu | geneset.ehmn_pathway_gene.mmu |
| geneset.ehmn_pathway_gene.rno | geneset.ehmn_pathway_gene.rno |
| geneset.gene_expression.hsa | geneset.gene_expression.hsa |
| geneset.gene_expression.mmu | geneset.gene_expression.mmu |
| geneset.GOBP.dme | geneset.GOBP.dme |
| geneset.GOBP.hsa | geneset.GOBP.hsa |
| geneset.GOBP.mmu | geneset.GOBP.mmu |
| geneset.GOBP.rno | geneset.GOBP.rno |
| geneset.GOCC.dme | geneset.GOCC.dme |
| geneset.GOCC.hsa | geneset.GOCC.hsa |
| geneset.GOCC.mmu | geneset.GOCC.mmu |
| geneset.GOCC.rno | geneset.GOCC.rno |
| geneset.GOMF.dme | geneset.GOMF.dme |
| geneset.GOMF.hsa | geneset.GOMF.hsa |
| geneset.GOMF.mmu | geneset.GOMF.mmu |
| geneset.GOMF.rno | geneset.GOMF.rno |
| geneset.kegg_pathway.hsa | geneset.kegg_pathway.hsa |
| geneset.kegg_pathway.mmu | geneset.kegg_pathway.mmu |
| geneset.kegg_pathway.rno | geneset.kegg_pathway.rno |
| geneset.mesh.hsa | geneset.mesh.hsa |
| geneset.mesh.mmu | geneset.mesh.mmu |
| geneset.mesh.rno | geneset.mesh.rno |
| geneset.metabolite.hsa | geneset.metabolite.hsa |
| geneset.metabolite.mmu | geneset.metabolite.mmu |
| geneset.metabolite.rno | geneset.metabolite.rno |
| geneset.mirbase.hsa | geneset.mirbase.hsa |
| geneset.mirbase.mmu | geneset.mirbase.mmu |
| geneset.mirbase.rno | geneset.mirbase.rno |
| geneset.panther_pathway.hsa | geneset.panther_pathway.hsa |
| geneset.panther_pathway.mmu | geneset.panther_pathway.mmu |
| geneset.panther_pathway.rno | geneset.panther_pathway.rno |
| geneset.pfam.hsa | geneset.pfam.hsa |
| geneset.pfam.mmu | geneset.pfam.mmu |
| geneset.pfam.rno | geneset.pfam.rno |
| geneset.protein_interaction_mimi.hsa | geneset.protein_interaction_mimi.hsa |
| geneset.protein_interaction_mimi.mmu | geneset.protein_interaction_mimi.mmu |
| geneset.protein_interaction_mimi.rno | geneset.protein_interaction_mimi.rno |
| geneset.reactome.hsa | geneset.reactome.hsa |
| geneset.reactome.mmu | geneset.reactome.mmu |
| geneset.reactome.rno | geneset.reactome.rno |
| geneset.transcription_factors.hsa | geneset.transcription_factors.hsa |
| geneset.transcription_factors.mmu | geneset.transcription_factors.mmu |
| geneset.transcription_factors.rno | geneset.transcription_factors.rno |
| locusdef.dm3.10kb | locusdef.dm3.10kb |
| locusdef.dm3.10kb_and_more_upstream | locusdef.dm3.10kb_and_more_upstream |
| locusdef.dm3.1kb | locusdef.dm3.1kb |
| locusdef.dm3.5kb | locusdef.dm3.5kb |
| locusdef.dm3.exon | locusdef.dm3.exon |
| locusdef.dm3.intron | locusdef.dm3.intron |
| locusdef.dm3.nearest_gene | locusdef.dm3.nearest_gene |
| locusdef.dm3.nearest_tss | locusdef.dm3.nearest_tss |
| locusdef.hg19.10kb | locusdef.hg19.10kb |
| locusdef.hg19.10kb_and_more_upstream | locusdef.hg19.10kb_and_more_upstream |
| locusdef.hg19.1kb | locusdef.hg19.1kb |
| locusdef.hg19.5kb | locusdef.hg19.5kb |
| locusdef.hg19.exon | locusdef.hg19.exon |
| locusdef.hg19.intron | locusdef.hg19.intron |
| locusdef.hg19.nearest_gene | locusdef.hg19.nearest_gene |
| locusdef.hg19.nearest_tss | locusdef.hg19.nearest_tss |
| locusdef.mm10.10kb | locusdef.mm10.10kb |
| locusdef.mm10.10kb_and_more_upstream | locusdef.mm10.10kb_and_more_upstream |
| locusdef.mm10.1kb | locusdef.mm10.1kb |
| locusdef.mm10.5kb | locusdef.mm10.5kb |
| locusdef.mm10.exon | locusdef.mm10.exon |
| locusdef.mm10.intron | locusdef.mm10.intron |
| locusdef.mm10.nearest_gene | locusdef.mm10.nearest_gene |
| locusdef.mm10.nearest_tss | locusdef.mm10.nearest_tss |
| locusdef.mm9.10kb | locusdef.mm9.10kb |
| locusdef.mm9.10kb_and_more_upstream | locusdef.mm9.10kb_and_more_upstream |
| locusdef.mm9.1kb | locusdef.mm9.1kb |
| locusdef.mm9.5kb | locusdef.mm9.5kb |
| locusdef.mm9.exon | locusdef.mm9.exon |
| locusdef.mm9.intron | locusdef.mm9.intron |
| locusdef.mm9.nearest_gene | locusdef.mm9.nearest_gene |
| locusdef.mm9.nearest_tss | locusdef.mm9.nearest_tss |
| locusdef.rn4.10kb | locusdef.rn4.10kb |
| locusdef.rn4.10kb_and_more_upstream | locusdef.rn4.10kb_and_more_upstream |
| locusdef.rn4.1kb | locusdef.rn4.1kb |
| locusdef.rn4.5kb | locusdef.rn4.5kb |
| locusdef.rn4.exon | locusdef.rn4.exon |
| locusdef.rn4.intron | locusdef.rn4.intron |
| locusdef.rn4.nearest_gene | locusdef.rn4.nearest_gene |
| locusdef.rn4.nearest_tss | locusdef.rn4.nearest_tss |
| LocusDefinition-class | Class '"LocusDefinition"' |
| mappa.hg19.10kb.100mer | mappa.hg19.10kb.100mer |
| mappa.hg19.10kb.24mer | mappa.hg19.10kb.24mer |
| mappa.hg19.10kb.36mer | mappa.hg19.10kb.36mer |
| mappa.hg19.10kb.40mer | mappa.hg19.10kb.40mer |
| mappa.hg19.10kb.50mer | mappa.hg19.10kb.50mer |
| mappa.hg19.10kb.75mer | mappa.hg19.10kb.75mer |
| mappa.hg19.10kb_and_more_upstream.100mer | mappa.hg19.10kb_and_more_upstream.100mer |
| mappa.hg19.10kb_and_more_upstream.24mer | mappa.hg19.10kb_and_more_upstream.24mer |
| mappa.hg19.10kb_and_more_upstream.36mer | mappa.hg19.10kb_and_more_upstream.36mer |
| mappa.hg19.10kb_and_more_upstream.40mer | mappa.hg19.10kb_and_more_upstream.40mer |
| mappa.hg19.10kb_and_more_upstream.50mer | mappa.hg19.10kb_and_more_upstream.50mer |
| mappa.hg19.10kb_and_more_upstream.75mer | mappa.hg19.10kb_and_more_upstream.75mer |
| mappa.hg19.1kb.100mer | mappa.hg19.1kb.100mer |
| mappa.hg19.1kb.24mer | mappa.hg19.1kb.24mer |
| mappa.hg19.1kb.36mer | mappa.hg19.1kb.36mer |
| mappa.hg19.1kb.40mer | mappa.hg19.1kb.40mer |
| mappa.hg19.1kb.50mer | mappa.hg19.1kb.50mer |
| mappa.hg19.1kb.75mer | mappa.hg19.1kb.75mer |
| mappa.hg19.5kb.100mer | mappa.hg19.5kb.100mer |
| mappa.hg19.5kb.24mer | mappa.hg19.5kb.24mer |
| mappa.hg19.5kb.36mer | mappa.hg19.5kb.36mer |
| mappa.hg19.5kb.40mer | mappa.hg19.5kb.40mer |
| mappa.hg19.5kb.50mer | mappa.hg19.5kb.50mer |
| mappa.hg19.5kb.75mer | mappa.hg19.5kb.75mer |
| mappa.hg19.exon.100mer | mappa.hg19.exon.100mer |
| mappa.hg19.exon.24mer | mappa.hg19.exon.24mer |
| mappa.hg19.exon.36mer | mappa.hg19.exon.36mer |
| mappa.hg19.exon.40mer | mappa.hg19.exon.40mer |
| mappa.hg19.exon.50mer | mappa.hg19.exon.50mer |
| mappa.hg19.exon.75mer | mappa.hg19.exon.75mer |
| mappa.hg19.intron.100mer | mappa.hg19.intron.100mer |
| mappa.hg19.intron.24mer | mappa.hg19.intron.24mer |
| mappa.hg19.intron.36mer | mappa.hg19.intron.36mer |
| mappa.hg19.intron.40mer | mappa.hg19.intron.40mer |
| mappa.hg19.intron.50mer | mappa.hg19.intron.50mer |
| mappa.hg19.intron.75mer | mappa.hg19.intron.75mer |
| mappa.hg19.nearest_gene.100mer | mappa.hg19.nearest_gene.100mer |
| mappa.hg19.nearest_gene.24mer | mappa.hg19.nearest_gene.24mer |
| mappa.hg19.nearest_gene.36mer | mappa.hg19.nearest_gene.36mer |
| mappa.hg19.nearest_gene.40mer | mappa.hg19.nearest_gene.40mer |
| mappa.hg19.nearest_gene.50mer | mappa.hg19.nearest_gene.50mer |
| mappa.hg19.nearest_gene.75mer | mappa.hg19.nearest_gene.75mer |
| mappa.hg19.nearest_tss.100mer | mappa.hg19.nearest_tss.100mer |
| mappa.hg19.nearest_tss.24mer | mappa.hg19.nearest_tss.24mer |
| mappa.hg19.nearest_tss.36mer | mappa.hg19.nearest_tss.36mer |
| mappa.hg19.nearest_tss.40mer | mappa.hg19.nearest_tss.40mer |
| mappa.hg19.nearest_tss.50mer | mappa.hg19.nearest_tss.50mer |
| mappa.hg19.nearest_tss.75mer | mappa.hg19.nearest_tss.75mer |
| mappa.mm9.10kb.100mer | mappa.mm9.10kb.100mer |
| mappa.mm9.10kb.36mer | mappa.mm9.10kb.36mer |
| mappa.mm9.10kb.40mer | mappa.mm9.10kb.40mer |
| mappa.mm9.10kb.50mer | mappa.mm9.10kb.50mer |
| mappa.mm9.10kb.75mer | mappa.mm9.10kb.75mer |
| mappa.mm9.10kb_and_more_upstream.100mer | mappa.mm9.10kb_and_more_upstream.100mer |
| mappa.mm9.10kb_and_more_upstream.36mer | mappa.mm9.10kb_and_more_upstream.36mer |
| mappa.mm9.10kb_and_more_upstream.40mer | mappa.mm9.10kb_and_more_upstream.40mer |
| mappa.mm9.10kb_and_more_upstream.50mer | mappa.mm9.10kb_and_more_upstream.50mer |
| mappa.mm9.10kb_and_more_upstream.75mer | mappa.mm9.10kb_and_more_upstream.75mer |
| mappa.mm9.1kb.100mer | mappa.mm9.1kb.100mer |
| mappa.mm9.1kb.36mer | mappa.mm9.1kb.36mer |
| mappa.mm9.1kb.40mer | mappa.mm9.1kb.40mer |
| mappa.mm9.1kb.50mer | mappa.mm9.1kb.50mer |
| mappa.mm9.1kb.75mer | mappa.mm9.1kb.75mer |
| mappa.mm9.5kb.100mer | mappa.mm9.5kb.100mer |
| mappa.mm9.5kb.36mer | mappa.mm9.5kb.36mer |
| mappa.mm9.5kb.40mer | mappa.mm9.5kb.40mer |
| mappa.mm9.5kb.50mer | mappa.mm9.5kb.50mer |
| mappa.mm9.5kb.75mer | mappa.mm9.5kb.75mer |
| mappa.mm9.exon.100mer | mappa.mm9.exon.100mer |
| mappa.mm9.exon.36mer | mappa.mm9.exon.36mer |
| mappa.mm9.exon.40mer | mappa.mm9.exon.40mer |
| mappa.mm9.exon.50mer | mappa.mm9.exon.50mer |
| mappa.mm9.exon.75mer | mappa.mm9.exon.75mer |
| mappa.mm9.intron.100mer | mappa.mm9.intron.100mer |
| mappa.mm9.intron.36mer | mappa.mm9.intron.36mer |
| mappa.mm9.intron.40mer | mappa.mm9.intron.40mer |
| mappa.mm9.intron.50mer | mappa.mm9.intron.50mer |
| mappa.mm9.intron.75mer | mappa.mm9.intron.75mer |
| mappa.mm9.nearest_gene.100mer | mappa.mm9.nearest_gene.100mer |
| mappa.mm9.nearest_gene.36mer | mappa.mm9.nearest_gene.36mer |
| mappa.mm9.nearest_gene.40mer | mappa.mm9.nearest_gene.40mer |
| mappa.mm9.nearest_gene.50mer | mappa.mm9.nearest_gene.50mer |
| mappa.mm9.nearest_gene.75mer | mappa.mm9.nearest_gene.75mer |
| mappa.mm9.nearest_tss.100mer | mappa.mm9.nearest_tss.100mer |
| mappa.mm9.nearest_tss.36mer | mappa.mm9.nearest_tss.36mer |
| mappa.mm9.nearest_tss.40mer | mappa.mm9.nearest_tss.40mer |
| mappa.mm9.nearest_tss.50mer | mappa.mm9.nearest_tss.50mer |
| mappa.mm9.nearest_tss.75mer | mappa.mm9.nearest_tss.75mer |
| peaks_E2F4 | ChIP-seq Peaks for the E2F4 Transcription Factor |
| peaks_H3K4me3_GM12878 | ChIP-seq Peaks for the Histone Modification H3K4me3 in GM12878 |
| tss.dm3 | tss.dm3 |
| tss.hg19 | tss.hg19 |
| tss.mm10 | tss.mm10 |
| tss.mm9 | tss.mm9 |
| tss.rn4 | tss.rn4 |