To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("targetscan.Mm.eg.db")

In most cases, you don't need to download the package archive at all.

targetscan.Mm.eg.db

TargetScan miRNA target predictions for mouse

Bioconductor version: 3.0

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

Citation (from within R, enter citation("targetscan.Mm.eg.db")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("targetscan.Mm.eg.db")

Documentation


PDF		Reference Manual
Text		LICENSE

Details

biocViews	AnnotationData, FunctionalAnnotation
Version	0.6.1
License	file LICENSE
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3)
Imports	methods, AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	MmPalateMiRNA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	targetscan.Mm.eg.db_0.6.1.tar.gz
Windows Binary	targetscan.Mm.eg.db_0.6.1.zip
Mac OS X 10.6 (Snow Leopard)	targetscan.Mm.eg.db_0.6.1.tgz
Mac OS X 10.9 (Mavericks)	targetscan.Mm.eg.db_0.6.1.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center