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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("phastCons100way.UCSC.hg19")
In most cases, you don't need to download the package archive at all.
phastCons100way.UCSC.hg19
UCSC phastCons conservation scores
Bioconductor version: 3.0
UCSC phastCons conservation scores from alignments of 100 vertebrate species
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R,
enter citation("phastCons100way.UCSC.hg19")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("phastCons100way.UCSC.hg19")
Documentation
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, PhastConsDb |
| Version | 3.0.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0), VariantFiltering(>= 1.2.4) |
| Imports | utils, IRanges, GenomicRanges, BSgenome |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | VariantFiltering |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | phastCons100way.UCSC.hg19_3.0.0.tar.gz |
| Windows Binary | phastCons100way.UCSC.hg19_3.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | phastCons100way.UCSC.hg19_3.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | phastCons100way.UCSC.hg19_3.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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