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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mirbase.db")
In most cases, you don't need to download the package archive at all.
mirbase.db
miRBase: the microRNA database
Bioconductor version: 3.0
miRBase: the microRNA database assembled using data from miRBase (http://www.mirbase.org/).
Author: James F. Reid <reidjf at gmail.com>
Maintainer: James F. Reid <reidjf at gmail.com>
Citation (from within R,
enter citation("mirbase.db")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mirbase.db")
Documentation
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 1.2.0 |
| License | file LICENSE |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.22.5) |
| Imports | methods, AnnotationDbi |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GenomicFeatures |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mirbase.db_1.2.0.tar.gz |
| Windows Binary | mirbase.db_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | mirbase.db_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | mirbase.db_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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