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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SIFT.Hsapiens.dbSNP137")
In most cases, you don't need to download the package archive at all.
SIFT.Hsapiens.dbSNP137
PROVEAN/SIFT Predictions for Homo sapiens dbSNP build 137
Bioconductor version: 3.0
Database of PROVEAN/SIFT predictions for Homo sapiens dbSNP build 137
Author: Valerie Obenchain
Maintainer: Valerie Obenchain <vobencha at fhcrc.org>
Citation (from within R,
enter citation("SIFT.Hsapiens.dbSNP137")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SIFT.Hsapiens.dbSNP137")
Documentation
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | VariantAnnotation(>= 1.9.15), RSQLite (>= 0.11.0) |
| Imports | AnnotationDbi |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | VariantFiltering |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SIFT.Hsapiens.dbSNP137_1.0.0.tar.gz |
| Windows Binary | SIFT.Hsapiens.dbSNP137_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | SIFT.Hsapiens.dbSNP137_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | SIFT.Hsapiens.dbSNP137_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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