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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("webbioc")
In most cases, you don't need to download the package archive at all.
webbioc
Bioconductor Web Interface
Bioconductor version: 3.0
An integrated web interface for doing microarray analysis using several of the Bioconductor packages. It is intended to be deployed as a centralized bioinformatics resource for use by many users. (Currently only Affymetrix oligonucleotide analysis is supported.)
Author: Colin A. Smith <webbioc at colinsmith.org>
Maintainer: Colin A. Smith <webbioc at colinsmith.org>
Citation (from within R,
enter citation("webbioc")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("webbioc")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("webbioc")
| R Script | webbioc Demo Script | |
| R Script | webbioc Overview | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Infrastructure, Microarray, OneChannel, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier |
| License | GPL (>= 2) |
| Depends | R (>= 1.8.0), Biobase, affy, multtest, annaffy, vsn, gcrma, qvalue |
| Imports | multtest, qvalue, stats, utils, BiocInstaller |
| LinkingTo | |
| Suggests | |
| SystemRequirements | Unix, Perl (>= 5.6.0), Netpbm |
| Enhances | |
| URL | http://www.bioconductor.org/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | webbioc_1.38.0.tar.gz |
| Windows Binary | webbioc_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | webbioc_1.38.0.tgz |
| Mac OS X 10.9 (Mavericks) | webbioc_1.38.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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