To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("weaver")
In most cases, you don't need to download the package archive at all.
weaver
Tools and extensions for processing Sweave documents
Bioconductor version: 3.0
This package provides enhancements on the Sweave() function in the base package. In particular a facility for caching code chunk results is included.
Author: Seth Falcon
Maintainer: Seth Falcon <seth at userprimary.net>
Citation (from within R,
enter citation("weaver")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("weaver")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("weaver")
| R Script | Using weaver to process Sweave documents | |
| Reference Manual |
Details
| biocViews | Infrastructure, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) |
| License | GPL-2 |
| Depends | R (>= 2.5.0), digest, tools, utils, codetools |
| Imports | |
| LinkingTo | |
| Suggests | codetools |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BiocCaseStudies |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | weaver_1.32.0.tar.gz |
| Windows Binary | weaver_1.32.0.zip |
| Mac OS X 10.6 (Snow Leopard) | weaver_1.32.0.tgz |
| Mac OS X 10.9 (Mavericks) | weaver_1.32.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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