To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("sscore")
In most cases, you don't need to download the package archive at all.
sscore
S-Score Algorithm for Affymetrix Oligonucleotide Microarrays
Bioconductor version: 3.0
This package contains an implementation of the S-Score algorithm as described by Zhang et al (2002).
Author: Richard Kennedy <rkennedy at ms.soph.uab.edu>, based on C++ code from Li Zhang <zhangli at odin.mdacc.tmc.edu> and Borland Delphi code from Robnet Kerns <rtkerns at vcu.edu>.
Maintainer: Richard Kennedy <rkennedy at ms.soph.uab.edu>
Citation (from within R,
enter citation("sscore")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("sscore")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sscore")
| R Script | SScore primer | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) |
| License | GPL (>= 2) |
| Depends | R (>= 1.8.0), affy, affyio |
| Imports | |
| LinkingTo | |
| Suggests | affydata |
| SystemRequirements | |
| Enhances | |
| URL | http://home.att.net/~richard-kennedy/professional.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | sscore_1.38.0.tar.gz |
| Windows Binary | sscore_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | sscore_1.38.0.tgz |
| Mac OS X 10.9 (Mavericks) | sscore_1.38.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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