To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")

In most cases, you don't need to download the package archive at all.

shinyTANDEM

Provides a GUI for rTANDEM

Bioconductor version: 3.0

This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.

Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>

Citation (from within R, enter citation("shinyTANDEM")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyTANDEM")

PDF	R Script	shinyTANDEM user guide
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.4.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	shinyTANDEM_1.4.0.tar.gz
Windows Binary	shinyTANDEM_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)	shinyTANDEM_1.4.0.tgz
Mac OS X 10.9 (Mavericks)	shinyTANDEM_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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