To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("polyester")

In most cases, you don't need to download the package archive at all.

polyester

Simulate RNA-seq reads

Bioconductor version: 3.0

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Author: Alyssa C. Frazee, Andrew E. Jaffe, Jeffrey T. Leek

Maintainer: Alyssa Frazee <alyssa.frazee at gmail.com>, Jeff Leek <jtleek at gmail.com>

Citation (from within R, enter citation("polyester")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("polyester")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("polyester")

HTML	R Script	The Polyester package for simulating RNA-seq reads
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Sequencing, Software
Version	1.0.2
In Bioconductor since	BioC 3.0 (R-3.1)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports	Biostrings(>= 2.32.0), IRanges, S4Vectors
LinkingTo
Suggests	knitr, ballgown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	polyester_1.0.2.tar.gz
Windows Binary	polyester_1.0.2.zip
Mac OS X 10.6 (Snow Leopard)	polyester_1.0.2.tgz
Mac OS X 10.9 (Mavericks)	polyester_1.0.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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