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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pkgDepTools")
In most cases, you don't need to download the package archive at all.
pkgDepTools
Package Dependency Tools
Bioconductor version: 3.0
This package provides tools for computing and analyzing dependency relationships among R packages. It provides tools for building a graph-based representation of the dependencies among all packages in a list of CRAN-style package repositories. There are also utilities for computing installation order of a given package. If the RCurl package is available, an estimate of the download size required to install a given package and its dependencies can be obtained.
Author: Seth Falcon
Maintainer: Seth Falcon <seth at userprimary.net>
Citation (from within R,
enter citation("pkgDepTools")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pkgDepTools")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pkgDepTools")
| R Script | How to Use pkgDepTools | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Infrastructure, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) |
| License | GPL-2 |
| Depends | methods, graph, RBGL |
| Imports | graph, RBGL |
| LinkingTo | |
| Suggests | Biobase, Rgraphviz, RCurl, BiocInstaller |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pkgDepTools_1.32.0.tar.gz |
| Windows Binary | pkgDepTools_1.32.0.zip |
| Mac OS X 10.6 (Snow Leopard) | pkgDepTools_1.32.0.tgz |
| Mac OS X 10.9 (Mavericks) | pkgDepTools_1.32.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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