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source("http://bioconductor.org/biocLite.R")
biocLite("netresponse")
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netresponse
netresponse: functional network analysis
Bioconductor version: 3.0
Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.
Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R,
enter citation("netresponse")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("netresponse")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netresponse")
| R Script | netresponse | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, Software, Transcription |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) |
| License | GPL (>=2) |
| Depends | R (>= 2.15.1), dmt, igraph, infotheo, ggplot2, graph, mclust, methods, minet, parallel, qvalue, RColorBrewer, reshape, Rgraphviz |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/antagomir/netresponse |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | netresponse_1.16.0.tar.gz |
| Windows Binary | netresponse_1.16.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | netresponse_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | netresponse_1.16.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
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- RNA-Seq workflow: gene-level exploratory analysis and differential expression
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