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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("inSilicoDb")
In most cases, you don't need to download the package archive at all.
inSilicoDb
Access to the InSilico Database
Bioconductor version: 3.0
Access expert curated and normalized microarray eSet datasets from the InSilico Database.
Author: Jaro Vanderheijden [ctb], Quentin De Clerck [ctb], Jonatan Taminau [cre]
Maintainer: InSilico DB <support at insilicodb.com>
Citation (from within R,
enter citation("inSilicoDb")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("inSilicoDb")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("inSilicoDb")
| R Script | Using the inSilicoDb package | |
| R Script | Using the inSilicoDb v2 package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Microarray, Software |
| Version | 2.2.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) |
| License | GPL-2 |
| Depends | R (>= 3.0.0), rjson, Biobase, RCurl |
| Imports | |
| LinkingTo | |
| Suggests | limma |
| SystemRequirements | |
| Enhances | |
| URL | https://insilicodb.com |
| Depends On Me | |
| Imports Me | |
| Suggests Me | inSilicoMerging |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | inSilicoDb_2.2.1.tar.gz |
| Windows Binary | inSilicoDb_2.2.1.zip |
| Mac OS X 10.6 (Snow Leopard) | inSilicoDb_2.2.1.tgz |
| Mac OS X 10.9 (Mavericks) | inSilicoDb_2.2.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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