To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("groHMM")

In most cases, you don't need to download the package archive at all.

groHMM

GRO-seq Analysis Pipeline.

Bioconductor version: 3.0

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Minho Chae<minho.chae at gmail.com>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Citation (from within R, enter citation("groHMM")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("groHMM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("groHMM")

 

PDF R Script groHMM tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews Sequencing, Software
Version 1.0.2
In Bioconductor since BioC 3.0 (R-3.1)
License GPL-3
Depends R (>= 3.0.2), MASS, S4Vectors, IRanges, GenomicRanges, GenomicAlignments, rtracklayer, parallel
Imports
LinkingTo
Suggests BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source groHMM_1.0.2.tar.gz
Windows Binary groHMM_1.0.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) groHMM_1.0.2.tgz
Mac OS X 10.9 (Mavericks) groHMM_1.0.2.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

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