To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyILM")

In most cases, you don't need to download the package archive at all.

affyILM

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: 3.0

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>

Citation (from within R, enter citation("affyILM")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyILM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyILM")

PDF	R Script	affyILM1.3.0
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.18.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	GPL version 3
Depends	R (>= 2.10.0), methods, gcrma
Imports	affxparser(>= 1.16.0), affy, graphics, methods, Biobase
LinkingTo
Suggests	AffymetrixDataTestFiles
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	affyILM_1.18.0.tar.gz
Windows Binary	affyILM_1.18.0.zip
Mac OS X 10.6 (Snow Leopard)	affyILM_1.18.0.tgz
Mac OS X 10.9 (Mavericks)	affyILM_1.18.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center