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VanillaICE

A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: 3.0

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf <rscharpf at jhu.edu>, Kevin Scharpf, and Ingo Ruczinski <ingo at jhsph.edu>

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("VanillaICE")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("VanillaICE")

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browseVignettes("VanillaICE")

biocViews	CopyNumberVariation, Software
Version	1.28.5
In Bioconductor since	BioC 2.1 (R-2.6)
License	LGPL-2
Depends	R (>= 3.0.0), GenomicRanges
Imports	Biobase, oligoClasses(>= 1.24.0), IRanges(>= 1.14.0), S4Vectors, foreach, matrixStats, data.table, grid, lattice, methods, GenomeInfoDb, crlmm
LinkingTo
Suggests	RUnit, SNPchip, human610quadv1bCrlmm, BSgenome.Hsapiens.UCSC.hg18, ArrayTV
SystemRequirements
Enhances	doMC, doMPI, doSNOW, doParallel, doRedis
URL
Depends On Me
Imports Me	MinimumDistance
Suggests Me
Build Report

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