To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SemDist")

In most cases, you don't need to download the package archive at all.

SemDist

Information Accretion-based Function Predictor Evaluation

Bioconductor version: 3.0

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Citation (from within R, enter citation("SemDist")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SemDist")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")

PDF	R Script	introduction.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Classification, GO, Software
Version	1.0.0
In Bioconductor since	BioC 3.0 (R-3.1)
License	GPL (>= 2)
Depends	R (>= 3.1), AnnotationDbi, GO.db, annotate
Imports
LinkingTo
Suggests	GOSemSim
SystemRequirements
Enhances
URL	http://github.com/iangonzalez/SemDist
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SemDist_1.0.0.tar.gz
Windows Binary	SemDist_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	SemDist_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	SemDist_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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