To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SJava")
In most cases, you don't need to download the package archive at all.
SJava
The Omegahat interface for R and Java.
Bioconductor version: 3.0
An interface from R to Java to create and call Java objects and methods.
Author: Duncan Temple Lang, John Chambers
Maintainer: Martin Morgan <mtmorgan at fhcrc.org>
Citation (from within R,
enter citation("SJava")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SJava")
Documentation
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | Infrastructure, Software |
| Version | 0.92.1 |
| In Bioconductor since | BioC 2.5 (R-2.10) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | RWebServices |
| Imports Me | RWebServices |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SJava_0.92.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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