To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RedeR")

In most cases, you don't need to download the package archive at all.

RedeR

Interactive visualization and manipulation of nested networks

Bioconductor version: 3.0

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RedeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

 

PDF R Script Main vignette: interactive visualization and manipulation of nested networks
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.14.10
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.15), methods, igraph
Imports RCurl, XML
LinkingTo
Suggests PANR, pvclust
SystemRequirements Java Runtime Environment (>= 6)
Enhances
URL http://genomebiology.com/2012/13/4/R29
Depends On Me Fletcher2013b
Imports Me Mulder2012, RTN
Suggests Me PANR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RedeR_1.14.10.tar.gz
Windows Binary RedeR_1.14.10.zip
Mac OS X 10.6 (Snow Leopard) RedeR_1.14.10.tgz
Mac OS X 10.9 (Mavericks) RedeR_1.14.10.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center