To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

In most cases, you don't need to download the package archive at all.

Rbowtie

R bowtie wrapper

Bioconductor version: 3.0

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Author: Florian Hahne, Anita Lerch, Michael B Stadler

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

Citation (from within R, enter citation("Rbowtie")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbowtie")

PDF	R Script	An introduction to Rbowtie
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Alignment, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-1.0 \| file LICENSE
Depends
Imports
LinkingTo
Suggests	parallel
SystemRequirements
Enhances
URL
Depends On Me	QuasR
Imports Me
Suggests Me	chimera
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Rbowtie_1.6.0.tar.gz
Windows Binary	Rbowtie_1.6.0.zip
Mac OS X 10.6 (Snow Leopard)	Rbowtie_1.6.0.tgz
Mac OS X 10.9 (Mavericks)	Rbowtie_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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