- Home
- Bioconductor 3.0
- Software Packages
- RDRToolbox
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")
In most cases, you don't need to download the package archive at all.
RDRToolbox
A package for nonlinear dimension reduction with Isomap and LLE.
Bioconductor version: 3.0
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>
Citation (from within R,
enter citation("RDRToolbox")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDRToolbox")
| R Script | A package for nonlinear dimension reduction with Isomap and LLE. | |
| Reference Manual |
Details
| biocViews | Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) |
| License | GPL (>= 2) |
| Depends | R (>= 2.9.0) |
| Imports | graphics, grDevices, methods, stats, MASS, rgl |
| LinkingTo | |
| Suggests | golubEsets |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RDRToolbox_1.16.0.tar.gz |
| Windows Binary | RDRToolbox_1.16.0.zip |
| Mac OS X 10.6 (Snow Leopard) | RDRToolbox_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | RDRToolbox_1.16.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
