To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Polyfit")

In most cases, you don't need to download the package archive at all.

Polyfit

Add-on to DESeq to improve p-values and q-values

Bioconductor version: 3.0

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

Author: Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("Polyfit")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Polyfit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Polyfit")

PDF	R Script	Polyfit
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version	1.0.0
In Bioconductor since	BioC 3.0 (R-3.1)
License	GPL (>= 3)
Depends	DESeq
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Polyfit_1.0.0.tar.gz
Windows Binary	Polyfit_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	Polyfit_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	Polyfit_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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