To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PLPE")
In most cases, you don't need to download the package archive at all.
PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput Data
Bioconductor version: 3.0
This package performs tests for paired high-throughput data.
Author: HyungJun Cho <hj4cho at korea.ac.kr> and Jae K. Lee <jaeklee at virginia.edu>
Maintainer: Soo-heang Eo <hanansh at korea.ac.kr>
Citation (from within R,
enter citation("PLPE")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PLPE")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PLPE")
| R Script | PLPE Overview | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Proteomics, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) |
| License | GPL (>= 2) |
| Depends | R (>= 2.6.2), Biobase(>= 2.5.5), LPE, MASS, methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.korea.ac.kr/~stat2242/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | PLPE_1.26.0.tar.gz |
| Windows Binary | PLPE_1.26.0.zip |
| Mac OS X 10.6 (Snow Leopard) | PLPE_1.26.0.tgz |
| Mac OS X 10.9 (Mavericks) | PLPE_1.26.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
