To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("NCIgraph")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 3.0
Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.
Author: Laurent Jacob
Maintainer: Laurent Jacob <laurent.jacob at gmail.com>
Citation (from within R,
enter citation("NCIgraph")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("NCIgraph")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NCIgraph")
R Script | NCIgraph: networks from the NCI pathway integrated database as graphNEL objects. | |
Reference Manual |
biocViews | GraphAndNetwork, Pathways, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 2.8 (R-2.13) |
License | GPL-3 |
Depends | graph, R (>= 2.10.0) |
Imports | graph, KEGGgraph, methods, RBGL, RCytoscape, R.methodsS3 |
LinkingTo | |
Suggests | Rgraphviz |
SystemRequirements | |
Enhances | DEGraph |
URL | |
Depends On Me | |
Imports Me | DEGraph |
Suggests Me | DEGraph |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | NCIgraph_1.14.0.tar.gz |
Windows Binary | NCIgraph_1.14.0.zip |
Mac OS X 10.6 (Snow Leopard) | NCIgraph_1.14.0.tgz |
Mac OS X 10.9 (Mavericks) | NCIgraph_1.14.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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