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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MassSpecWavelet")
In most cases, you don't need to download the package archive at all.
MassSpecWavelet
Mass spectrum processing by wavelet-based algorithms
Bioconductor version: 3.0
Processing Mass Spectrometry spectrum by using wavelet based algorithm
Author: Pan Du, Warren Kibbe, Simon Lin
Maintainer: Pan Du <dupan.mail at gmail.com>
Citation (from within R,
enter citation("MassSpecWavelet")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MassSpecWavelet")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MassSpecWavelet")
| R Script | MassSpecWavelet | |
| Reference Manual |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) |
| License | LGPL (>= 2) |
| Depends | waveslim |
| Imports | |
| LinkingTo | |
| Suggests | xcms, caTools |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | cosmiq |
| Suggests Me | xcms |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MassSpecWavelet_1.32.0.tar.gz |
| Windows Binary | MassSpecWavelet_1.32.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | MassSpecWavelet_1.32.0.tgz |
| Mac OS X 10.9 (Mavericks) | MassSpecWavelet_1.32.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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