To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

In most cases, you don't need to download the package archive at all.

MSGFgui

A shiny GUI for MSGFplus

Bioconductor version: 3.0

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("MSGFgui")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSGFgui")

HTML	R Script	Using MSGFgui
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, MassSpectrometry, Proteomics, Software, Visualization
Version	1.0.2
In Bioconductor since	BioC 3.0 (R-3.1)
License	GPL (>= 2)
Depends	mzR
Imports	shiny (>= 0.11), mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), xlsx, tools
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RforProteomics
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MSGFgui_1.0.2.tar.gz
Windows Binary	MSGFgui_1.0.2.zip
Mac OS X 10.6 (Snow Leopard)	MSGFgui_1.0.2.tgz
Mac OS X 10.9 (Mavericks)	MSGFgui_1.0.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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