To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")

In most cases, you don't need to download the package archive at all.

MBAmethyl

Model-based analysis of DNA methylation data

Bioconductor version: 3.0

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author: Tao Wang, Mengjie Chen

Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>

Citation (from within R, enter citation("MBAmethyl")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBAmethyl")

PDF	R Script	MBAmethyl Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, MethylationArray, Software
Version	1.0.0
In Bioconductor since	BioC 3.0 (R-3.1)
License	Artistic-2.0
Depends	R (>= 2.15)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MBAmethyl_1.0.0.tar.gz
Windows Binary	MBAmethyl_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	MBAmethyl_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	MBAmethyl_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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