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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GeneMeta")
In most cases, you don't need to download the package archive at all.
GeneMeta
MetaAnalysis for High Throughput Experiments
Bioconductor version: 3.0
A collection of meta-analysis tools for analysing high throughput experimental data
Author: Lara Lusa <lusa at ifom-firc.it>, R. Gentleman, M. Ruschhaupt
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("GeneMeta")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GeneMeta")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneMeta")
| R Script | GeneMeta Vignette | |
| Reference Manual |
Details
| biocViews | GeneExpression, Metagenomics, Microarray, Sequencing, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, Biobase(>= 2.5.5), genefilter |
| Imports | methods, Biobase(>= 2.5.5) |
| LinkingTo | |
| Suggests | RColorBrewer |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | genefu, XDE |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GeneMeta_1.38.0.tar.gz |
| Windows Binary | GeneMeta_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | GeneMeta_1.38.0.tgz |
| Mac OS X 10.9 (Mavericks) | GeneMeta_1.38.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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