To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")
In most cases, you don't need to download the package archive at all.
GOSim
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Bioconductor version: 3.0
This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
Author: Holger Froehlich <frohlich at bit.uni-bonn.de>
Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>
Citation (from within R,
enter citation("GOSim")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOSim")
| R Script | GOsim | |
| Reference Manual |
Details
| biocViews | Clustering, DecisionTree, GO, Network, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) |
| License | GPL (>= 2) |
| Depends | GO.db, annotate, igraph |
| Imports | org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp, utils |
| LinkingTo | Rcpp |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GOSim_1.8.0.tar.gz |
| Windows Binary | GOSim_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | GOSim_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | GOSim_1.8.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
