To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: 3.0

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

PDF	R Script	Design Group-Specific FISH Probes
PDF	R Script	Design Group-Specific Primers
PDF	R Script	Design Microarray Probes
PDF	R Script	Finding Chimeric Sequences
PDF	R Script	Getting Started DECIPHERing
PDF	R Script	The Art of Multiple Sequence Alignment in R
PDF		Reference Manual

biocViews	Alignment, Clustering, DataImport, Genetics, Microarray, QualityControl, Sequencing, Software, Visualization, qPCR
Version	1.12.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-3
Depends	R (>= 2.13.0), Biostrings(>= 2.31.9), RSQLite (>= 0.9), stats, parallel
Imports	methods, S4Vectors, IRanges, XVector
LinkingTo	Biostrings, RSQLite, S4Vectors, IRanges, XVector
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