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- CNORode
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CNORode")
In most cases, you don't need to download the package archive at all.
CNORode
ODE add-on to CellNOptR
Bioconductor version: 3.0
ODE add-on to CellNOptR
Author: David Henriques, Thomas Cokelaer
Maintainer: David Henriques <davidpcnet at hotmail.com>
Citation (from within R,
enter citation("CNORode")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CNORode")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNORode")
| R Script | Main vignette:Playing with networks using CNORode | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse |
| Version | 1.8.1 |
| In Bioconductor since | BioC 2.11 (R-2.15) |
| License | GPL-2 |
| Depends | CellNOptR(>= 1.5.14), genalg |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | MEIGOR |
| URL | |
| Depends On Me | MEIGOR |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CNORode_1.8.1.tar.gz |
| Windows Binary | CNORode_1.8.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | CNORode_1.8.1.tgz |
| Mac OS X 10.9 (Mavericks) | CNORode_1.8.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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