rTANDEM-package |
An R encapsulation of X!TANDEM ('Jackhammer' release, 2013.06.15) |
AddTaxon |
Creates and manipulates parameter objects for rTANDEM |
addTaxon |
Creates and manipulates parameter objects for rTANDEM |
GetDegeneracy |
Extract information from rTANDEM result object |
getDegeneracy |
Extract information from rTANDEM result object |
GetParamFromXML |
Converts X!Tandem xml files to R objects and vice versa |
getParamFromXML |
Converts X!Tandem xml files to R objects and vice versa |
GetPeptides |
Extract information from rTANDEM result object |
getPeptides |
Extract information from rTANDEM result object |
GetProteins |
Extract information from rTANDEM result object |
getProteins |
Extract information from rTANDEM result object |
GetResultsFromXML |
Converts X!Tandem xml files to R objects and vice versa |
getResultsFromXML |
Converts X!Tandem xml files to R objects and vice versa |
GetTaxoFromXML |
Converts X!Tandem xml files to R objects and vice versa |
getTaxoFromXML |
Converts X!Tandem xml files to R objects and vice versa |
ms2.plot |
Plot spectrum from a rTResult object |
print.rTParam |
Creates and manipulates parameter objects for rTANDEM |
rTANDEM |
Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files |
rtandem |
Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files |
rTParam |
Creates and manipulates parameter objects for rTANDEM |
rTResult-class |
Class "rTResult" and "rTResult_s" |
rTResult_s-class |
Class "rTResult" and "rTResult_s" |
rTTaxo |
Creates and manipulates parameter objects for rTANDEM |
SetParamDefault |
Creates and manipulates parameter objects for rTANDEM |
setParamDefault |
Creates and manipulates parameter objects for rTANDEM |
SetParamIonTrap |
Creates and manipulates parameter objects for rTANDEM |
setParamIonTrap |
Creates and manipulates parameter objects for rTANDEM |
SetParamOrbitrap |
Creates and manipulates parameter objects for rTANDEM |
setParamOrbitrap |
Creates and manipulates parameter objects for rTANDEM |
SetParamPTMTreeSearch |
Creates and manipulates parameter objects for rTANDEM |
setParamPTMTreeSearch |
Creates and manipulates parameter objects for rTANDEM |
SetParamQuadTof05da |
Creates and manipulates parameter objects for rTANDEM |
setParamQuadTof05da |
Creates and manipulates parameter objects for rTANDEM |
SetParamQuadTof100ppm |
Creates and manipulates parameter objects for rTANDEM |
setParamQuadTof100ppm |
Creates and manipulates parameter objects for rTANDEM |
SetParamValue |
Creates and manipulates parameter objects for rTANDEM |
setParamValue |
Creates and manipulates parameter objects for rTANDEM |
tandem |
Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files |
WriteParamToXML |
Converts X!Tandem xml files to R objects and vice versa |
writeParamToXML |
Converts X!Tandem xml files to R objects and vice versa |
WriteTaxoToXML |
Converts X!Tandem xml files to R objects and vice versa |
writeTaxoToXML |
Converts X!Tandem xml files to R objects and vice versa |