Multivariate and directional gene set testing


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Documentation for package ‘mvGST’ version 1.0.0

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mvGST-package Multivariate and directional gene set testing
changeTO10 mvGST Other Functions
combinePvalues mvGST Other Functions
convertPvalues mvGST Other Functions
cut mvGST Other Functions
distributeWeight mvGST Other Functions
fillInList mvGST Other Functions
finalResults mvGST Other Functions
geneNameConvertRows mvGST Other Functions
generateGeneSets mvGST Other Functions
getAncestorsAndOffspring mvGST Other Functions
getCurrentChildren mvGST Other Functions
go2GeneSet mvGST Other Functions
go2Profile Creates tables showing profiles of specific gene sets.
graphCell Makes a GO graph highlighting the GO terms in the selected cell of the results table.
hartung mvGST Other Functions
interactiveGraph mvGST Other Functions
makeCoherent mvGST Other Functions
method2 mvGST Other Functions
method3 mvGST Other Functions
method4 mvGST Other Functions
mvGST Multivariate and directional gene set testing
mvGSTObject mvGST Other Functions
mvGSTsamples mvGSTsamples: Sample objects for the mvGST package
mvSort mvGST Other Functions
obatoclax.mvGST mvGSTsamples: Sample objects for the mvGST package
obatoclax.pvals mvGSTsamples: Sample objects for the mvGST package
oneSideBYAdjust mvGST Other Functions
p.adjust.SFL Short Focus Level adjustment
parathyroid.mvGST mvGSTsamples: Sample objects for the mvGST package
parathyroid.pvals mvGSTsamples: Sample objects for the mvGST package
pickOut Returns gene sets in a cell of the 'results.table'.
print.mvGST mvGST Other Functions
print.summary.mvGST mvGST Other Functions
profileCombine mvGST Other Functions
profiles mvGST Other Functions
profileTable Creates a table of significance profiles of gene sets from given matrix of p-values
separate mvGST Other Functions
summary.mvGST mvGST Other Functions
tableColumns mvGST Other Functions
turnListAround mvGST Other Functions