A C D F G H I K M N O P R S U V W X misc
VariantFiltering-package | Filtering of coding and non-coding genetic variants |
aaChangeType | VariantFiltering results class |
aaChangeType-method | VariantFiltering results class |
aaChangeType<- | VariantFiltering results class |
aaChangeType<--method | VariantFiltering results class |
allInheritanceModels | Analysis designed to be applied over a group of related individuals |
allInheritanceModels-method | Analysis designed to be applied over a group of related individuals |
allVariants | VariantFiltering results class |
allVariants-method | VariantFiltering results class |
annotateVariants | MafDb class |
annotateVariants-method | PhastConsDb class |
annotateVariants-method | MafDb class |
annotateVariants-method | PhastConsDb class |
autosomalDominant | Autosomal dominant inheritance analysis |
autosomalDominant-method | Autosomal dominant inheritance analysis |
autosomalRecessiveHeterozygous | Autosomal recessive inheritance analysis: Heterozygous |
autosomalRecessiveHeterozygous-method | Autosomal recessive inheritance analysis: Heterozygous |
autosomalRecessiveHomozygous | Autosomal recessive inheritance analysis: Homozygous |
autosomalRecessiveHomozygous-method | Autosomal recessive inheritance analysis: Homozygous |
class:VariantFilteringParam | VariantFiltering parameter class |
class:VariantFilteringResults | VariantFiltering results class |
class:VariantFilteringResultsAIM | VariantFiltering results class |
class:VariantFilteringResultsUI | VariantFiltering results class |
codeAF2RAW | MafDb class |
columns | MafDb class |
columns-method | MafDb class |
conservedPositions | Weight matrix class |
conservedPositions-method | Weight matrix class |
dbSNPpresent | VariantFiltering results class |
dbSNPpresent-method | VariantFiltering results class |
dbSNPpresent<- | VariantFiltering results class |
dbSNPpresent<--method | VariantFiltering results class |
decodeRAW2AF | MafDb class |
deNovo | De Novo variants analysis |
deNovo-method | De Novo variants analysis |
fetchKnownVariantsByID | MafDb class |
fetchKnownVariantsByID-method | MafDb class |
filteredVariants | VariantFiltering results class |
filteredVariants-method | VariantFiltering results class |
genePhylostrata | PhastConsDb class |
genePhylostrata-method | PhastConsDb class |
GenePhylostrataDb | PhastConsDb class |
GenePhylostrataDb-class | PhastConsDb class |
genePhylostratum | PhastConsDb class |
genePhylostratum-method | PhastConsDb class |
humanGenesPhylostrata | PhastConsDb class |
inheritanceModel | VariantFiltering results class |
inheritanceModel-method | VariantFiltering results class |
keys | MafDb class |
keys-method | MafDb class |
keytypes | MafDb class |
keytypes-method | MafDb class |
knownVariantsMAFcols | MafDb class |
knownVariantsMAFcols-method | MafDb class |
MafDb | MafDb class |
MafDb-class | MafDb class |
MAFpop | VariantFiltering results class |
MAFpop-method | VariantFiltering results class |
MAFpop<- | VariantFiltering results class |
MAFpop<--method | VariantFiltering results class |
maxMAF | VariantFiltering results class |
maxMAF-method | VariantFiltering results class |
maxMAF<- | VariantFiltering results class |
maxMAF<--method | VariantFiltering results class |
minCRYP3ss | VariantFiltering results class |
minCRYP3ss-method | VariantFiltering results class |
minCRYP3ss<- | VariantFiltering results class |
minCRYP3ss<--method | VariantFiltering results class |
minCRYP5ss | VariantFiltering results class |
minCRYP5ss-method | VariantFiltering results class |
minCRYP5ss<- | VariantFiltering results class |
minCRYP5ss<--method | VariantFiltering results class |
minPhastCons | VariantFiltering results class |
minPhastCons-method | VariantFiltering results class |
minPhastCons<- | VariantFiltering results class |
minPhastCons<--method | VariantFiltering results class |
minPhylostratum | VariantFiltering results class |
minPhylostratum-method | VariantFiltering results class |
minPhylostratum<- | VariantFiltering results class |
minPhylostratum<--method | VariantFiltering results class |
naMAF | VariantFiltering results class |
naMAF-method | VariantFiltering results class |
naMAF<- | VariantFiltering results class |
naMAF<--method | VariantFiltering results class |
names-method | VariantFiltering parameter class |
OMIMpresent | VariantFiltering results class |
OMIMpresent-method | VariantFiltering results class |
OMIMpresent<- | VariantFiltering results class |
OMIMpresent<--method | VariantFiltering results class |
organism-method | PhastConsDb class |
organism-method | PhastConsDb class |
param | VariantFiltering results class |
param-method | VariantFiltering results class |
PhastConsDb | PhastConsDb class |
PhastConsDb-class | PhastConsDb class |
provider-method | PhastConsDb class |
providerVersion-method | PhastConsDb class |
readAAradicalChangeMatrix | Read matrix of amino acid radical changes |
readWm | Weight matrix class |
referenceGenome-method | PhastConsDb class |
reportVariants | VariantFiltering results class |
reportVariants-method | VariantFiltering results class |
scores | PhastConsDb class |
scores-method | PhastConsDb class |
select | MafDb class |
select-method | MafDb class |
selectIndividual | VariantFiltering results class |
selectIndividual-method | VariantFiltering results class |
selectIndividual<- | VariantFiltering results class |
selectIndividual<--method | VariantFiltering results class |
seqinfo-method | PhastConsDb class |
seqlengths-method | PhastConsDb class |
seqnames-method | PhastConsDb class |
show-method | PhastConsDb class |
show-method | PhastConsDb class |
show-method | VariantFiltering parameter class |
show-method | VariantFiltering results class |
show-method | Weight matrix class |
unrelatedIndividuals | Analysis designed to be applied over a group of unrelated individuals |
unrelatedIndividuals-method | Analysis designed to be applied over a group of unrelated individuals |
VariantFiltering | Filtering of coding and non-coding genetic variants |
VariantFilteringParam | VariantFiltering parameter class |
VariantFilteringParam-class | VariantFiltering parameter class |
VariantFilteringParam-method | VariantFiltering parameter class |
VariantFilteringResults | VariantFiltering results class |
VariantFilteringResults-class | VariantFiltering results class |
VariantFilteringResultsAIM | VariantFiltering results class |
VariantFilteringResultsAIM-class | VariantFiltering results class |
VariantFilteringResultsUI | VariantFiltering results class |
VariantFilteringResultsUI-class | VariantFiltering results class |
variantType | VariantFiltering results class |
variantType-method | VariantFiltering results class |
variantType<- | VariantFiltering results class |
variantType<--method | VariantFiltering results class |
WeightMatrix | Weight matrix class |
WeightMatrix-class | Weight matrix class |
width-method | Weight matrix class |
wmAcceptorSites | Weight matrix class |
wmDonorSites | Weight matrix class |
wmScore | Weight matrix class |
wmScore-method | Weight matrix class |
xLinked | X-Linked inheritance analysis |
xLinked-method | X-Linked inheritance analysis |
$-method | VariantFiltering parameter class |