Rariant-package | Rariant package |
acCi | Confidence Interval Functions |
baseFillScale | Rariant color scales |
callConsensus | Tally processing low-level functions |
ciAdjustLevel | CI Adjust |
ciCovers | CI Utils |
ciOutside | CI Utils |
ciOverlap | CI Utils |
ciWidth | CI Utils |
coverageProbability | Assessment of CI methods |
eventFillScale | Rariant color scales |
evidenceHeatmap | Variant Evidence Heatmap |
feTest | Testing Functions |
filterCalls | Multi call processing |
findCalls | Multi call processing |
gr2pos | Position converters |
mergeCalls | Multi call processing |
mismatchCount | Tally processing low-level functions |
mismatchUtils | Tally processing low-level functions |
nhsCi | Confidence Interval Functions |
nmTest | Testing Functions |
plotAbundanceShift | Plotting Functions |
plotCIs | Plotting Functions |
plotConfidenceIntervals | Plotting Functions |
pos2gr | Position converters |
propCIs | Confidence Interval Functions |
propTests | Testing Functions |
Rariant | Rariant package |
rariant | Rariant calling functions |
rariant-method | Rariant calling functions |
rariant-methods | Rariant calling functions |
rariantInspect | Interactive inspection |
rariantStandalone | Rariant calling functions |
rateFillScale | Rariant color scales |
readRariant | Rariant calling functions |
scoreTest | Testing Functions |
selectStrand | Tally processing low-level functions |
seqDepth | Tally processing low-level functions |
splitSample | Split Sample for Binomial Data |
splitSampleBinom | Split Sample for Binomial Data |
tallyBamRegion | Tally a genomic region |
tallyPlot | Mismatch plot from BAM files |
updateCalls | Multi call processing |
verdictColorScale | Rariant color scales |
writeRariant | Rariant calling functions |
yesNoMaybe | Determine Variant Evidence |