Linear Model Toolset for Gene Set Enrichment Analysis


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Documentation for package ‘GSEAlm’ version 1.26.0

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CooksDPerGene Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
dfbetasPerGene Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
dffitsPerGene Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
getResidPerGene Row-by-Row Linear-Model Residuals for Gene Expression (or similar) Data Structures
gsealmPerm Nonparametric inference for linear models in Gene-Set-Enrichment Analysis (GSEA)
GSNormalize Aggregating and calculating expression statistics by Gene Set
identity Aggregating and calculating expression statistics by Gene Set
Leverage Linear-Model Deletion Diagnostics for Gene Expression (or similar) Data Structures
lmPerGene Fit linear model for each gene
mnDiffPlot Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA)
one Aggregating and calculating expression statistics by Gene Set
resplot Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA)
restrip Simple Graphical Summaries for Gene Set Enrichment Analysis (GSEA)