comb.ea.results |
Combining enrichment analysis results |
compile.grn.from.kegg |
Compilation of a gene regulatory network from KEGG pathways |
de.ana |
Differential expression analysis between two sample groups |
download.kegg.pathways |
Download of KEGG pathways for a particular organism |
ea.browse |
Exploration of enrichment analysis results |
ebrowser |
Seamless navigation through enrichment analysis results |
exprs.heatmap |
Visualization of gene expression |
get.kegg.genesets |
Definition of gene sets according to KEGG pathways for a specified organism |
ggea |
Network-based enrichment analysis (NBEA) |
ggea.graph |
GGEA graphs of consistency between regulation and expression |
ggea.graph.legend |
GGEA graphs of consistency between regulation and expression |
gs.ranking |
Exploration of enrichment analysis results |
gsea |
Set-based enrichment analysis (SBEA) |
nbea |
Network-based enrichment analysis (NBEA) |
nbea.methods |
Network-based enrichment analysis (NBEA) |
ora |
Set-based enrichment analysis (SBEA) |
parse.genesets.from.GMT |
Definition of gene sets according to KEGG pathways for a specified organism |
pdistr |
Visualization of gene expression |
probe.2.gene.eset |
Transformation of probe level expression to gene level expression |
read.eset |
Reading gene expression data from file into an expression set |
sbea |
Set-based enrichment analysis (SBEA) |
sbea.methods |
Set-based enrichment analysis (SBEA) |
volcano |
Visualization of gene expression |