Seamless navigation through combined results of set-based and network-based enrichment analysis


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Documentation for package ‘EnrichmentBrowser’ version 1.0.3

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comb.ea.results Combining enrichment analysis results
compile.grn.from.kegg Compilation of a gene regulatory network from KEGG pathways
de.ana Differential expression analysis between two sample groups
download.kegg.pathways Download of KEGG pathways for a particular organism
ea.browse Exploration of enrichment analysis results
ebrowser Seamless navigation through enrichment analysis results
exprs.heatmap Visualization of gene expression
get.kegg.genesets Definition of gene sets according to KEGG pathways for a specified organism
ggea Network-based enrichment analysis (NBEA)
ggea.graph GGEA graphs of consistency between regulation and expression
ggea.graph.legend GGEA graphs of consistency between regulation and expression
gs.ranking Exploration of enrichment analysis results
gsea Set-based enrichment analysis (SBEA)
nbea Network-based enrichment analysis (NBEA)
nbea.methods Network-based enrichment analysis (NBEA)
ora Set-based enrichment analysis (SBEA)
parse.genesets.from.GMT Definition of gene sets according to KEGG pathways for a specified organism
pdistr Visualization of gene expression
probe.2.gene.eset Transformation of probe level expression to gene level expression
read.eset Reading gene expression data from file into an expression set
sbea Set-based enrichment analysis (SBEA)
sbea.methods Set-based enrichment analysis (SBEA)
volcano Visualization of gene expression