Gene Selection


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Documentation for package ‘DFP’ version 1.24.0

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DFP-package DFP Package Overview
calculateDiscriminantFuzzyPattern Calculates the Discriminant Fuzzy Pattern to select significative genes
calculateFuzzyPatterns Calculates a Fuzzy Pattern for each category of the samples
calculateMembershipFunctions Calculates Membership Functions
computeMembership-method Class "HighExpressionLevel"
computeMembership-method Class "LowExpressionLevel"
computeMembership-method Class "MediumExpressionLevel"
DFP DFP Package Overview
discretizeExpressionValues Function to discretize gene expression data
discriminantFuzzyPattern Discriminant Fuzzy Pattern to filter genes
ExpressionLevel-class Class "ExpressionLevel"
HighExpressionLevel-class Class "HighExpressionLevel"
LowExpressionLevel-class Class "LowExpressionLevel"
MediumExpressionLevel-class Class "MediumExpressionLevel"
plotDiscriminantFuzzyPattern Plots the Discriminant Fuzzy Pattern of the relevant genes
plotMembershipFunctions Plots the Membership Functions (Low, Medium, High) used to discretize gene expression values
readCSV Creates an ExpressionSet with an AnnotatedDataFrame from CSV files
rmadataset A sample ExpressionSet object
setValues-method Class "HighExpressionLevel"
setValues-method Class "LowExpressionLevel"
setValues-method Class "MediumExpressionLevel"
show-method Class "ExpressionLevel"
show-methods Prints the slots (attributes) of an ExpressionLevel object
showDiscreteValues Prints the labels to which the algorithm converts the gene expression values
showFuzzyPatterns Plots the Fuzzy Patterns corresponding to a class