annotateBedFromDb |
Annotate .bed file to genes |
bed.sample |
A sample of 25 rows from a .bed file of mm9 regions |
compareZscores |
Compare the Z scores of individual GO terms between two input annotation charts |
doZtrans.single |
Z transform a single functional annotation chart from DAVID |
gata4 |
A .bed file containing genomic ranges sampled from gata4 |
getFnAnot_genome |
Get the functional annotation chart of a gene list using DAVID |
mef2a |
A .bed file containing genomic ranges sampled from mef2a |
nkx25 |
A .bed file containing genomic ranges sampled from nkx25 |
p300 |
A .bed file containing genomic ranges sampled from p300 |
PCAplot |
Plot PCA given an input list of fnAnot charts |
plotDendrogram |
Plot dendrogram given an input list of fnAnot charts |
plotInteractive |
Interactive plotting function for groups of GO terms |
plotPairwise |
Generates a scatterplot of two sets of GO terms based on DAVID P-values |
plotTwoGODags |
Plots a directed acyclic graph of GO terms from two different sources |
plotZRankedDAG |
Plot a directed acyclic graph (DAG) based on the corrected Pvalues generated from comparing two sets of Z scores. |
plotZScores |
Performs z transform on two sets of GO terms and plots scatterplot of result |
slidingJaccard |
Plot two functional annotation charts using a sliding Jaccard coefficient |
srf |
A .bed file containing genomic ranges sampled from srf |
tbx5 |
A .bed file containing genomic ranges sampled from tbx5 |
viewKegg |
Compare KEGG pathways between two functional annotation charts |
zTransformDirectory |
Z-score transformation of DAVID functional annotation charts in a supplied directory |