Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems


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Documentation for package ‘CRISPRseek’ version 1.4.2

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CRISPRseek-package Design of target-specific guide RNAs (gRNAs) in CRISPR-Cas9, genome-editing systems
buildFeatureVectorForScoring Build feature vectors
calculategRNAEfficiency Calculate gRNA Efficiency
compare2Sequences Compare 2 input sequences/sequence sets for possible guide RNAs (gRNAs)
CRISPRseek Design of target-specific guide RNAs (gRNAs) in CRISPR-Cas9, genome-editing systems
filtergRNAs Filter gRNAs
filterOffTarget filter off targets and generate reports.
findgRNAs Find potential gRNAs
getOfftargetScore Calculate score for each off target
offTargetAnalysis Design of target-specific guide RNAs for CRISPR-Cas9 system in one function
searchHits Search for off targets
translatePattern translate pattern from IUPAC Extended Genetic Alphabet to regular expression
writeHits Write the hits of sequence search to a file