Package: metagene
Version: 1.0.0
Date: 2014-05-05
Title: A package to produce metagene plots
Author: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>,
        Fabien Claude Lamaze <fabien.lamaze.1@ulaval.ca>,
        Rawane Samb <rawane.samb.1@ulaval.ca>,
        Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> and
        Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>.
Author@R: c(person("Charles", "Joly Beauparlant",
        email="charles.joly-beauparlant@crchul.ulaval.ca"),
        person("Fabien Claude", "Lamaze",
        email="fabien.lamaze.1@ulaval.ca"), person("Rawane", "Samb",
        email="rawane.samb.1@ulaval.ca"), person("Astrid
        Louise","Deschenes",
        email="Astrid-Louise.Deschenes@crchudequebec.ulaval.ca")
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca"))
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
Description: This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Pre-calculated features (such as transcription start sites of protein coding gene or enhancer) are available. Bam files are used to increase the resolution. Multiple combination of group of features and or group of bam files can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.
biocViews: ChIPSeq, Genetics, MultipleComparison
License: Artistic-2.0
BugReports: https://github.com/CharlesJB/metagene/issues
VignetteBuilder: knitr
Depends: rtracklayer, GenomicRanges, GenomicAlignments, ggplot2
Enhances: parallel, biomaRt
Suggests: RUnit, BiocGenerics, knitr
Packaged: 2014-10-14 04:12:49 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 14:33:54 UTC; unix
