$-method | readParam class and methods |
asDGEList | Statistical wrappers for SummarizedExperiment objects |
asDGEList-method | Statistical wrappers for SummarizedExperiment objects |
average | Statistical wrappers for SummarizedExperiment objects |
average-method | Statistical wrappers for SummarizedExperiment objects |
combineTests | Combine statistics across multiple tests |
correlateReads | Compute correlation coefficients between reads |
csawUsersGuide | View csaw user's guide |
detailRanges | Add annotation to ranges |
extractReads | Extract reads from a BAM file |
getBestTest | Get the best test in a cluster |
getPETSizes | Compute fragment lengths for paired-end tags |
mergeWindows | Merge windows into clusters |
normalize | Statistical wrappers for SummarizedExperiment objects |
normalize-method | Statistical wrappers for SummarizedExperiment objects |
normalizeCounts | Normalize counts between libraries |
readParam | readParam class and methods |
readParam-class | readParam class and methods |
reform | readParam class and methods |
reform-method | readParam class and methods |
regionCounts | Count reads overlapping each region |
show-method | readParam class and methods |
windowCounts | Count reads overlapping each window |