ToPASeq-package |
Package for topology-based pathway analysis of microarray and RNASeq data |
AdjacencyMatrix2Pathway |
Function to coerce an adjacency matrix to a pathway |
Clipper |
Function to use clipper method on microarray or RNA-Seq data |
convertIdentifiersByVector |
Function to convert identifiers in pathways by user specified vector |
defaultEdgeAttrs |
Auxiliary data needed for SPIA method |
DEGraph |
Function to use DEGraph method on microarray or RNA-Seq data |
degtable |
Function to extract parts of object |
graphNEL2Pathway |
Function to coerce a graphNEL to a pathway |
PWEA |
Function to use PWEA method on microarray or RNA-Seq data |
reduceGraph |
Function to reduce the pathway graph |
res |
Function to extract parts of object |
SPIA |
Function to use SPIA method on microarray or RNA-Seq data |
TAPPA |
Function to use TAPPA method on microarray or RNA-Seq data |
TBS |
Function to use TBS method on microarray or RNA-Seq data |
ToPASeq |
Package for topology-based pathway analysis of microarray and RNASeq data |
topo.sig |
Function to extract parts of object |
TopologyGSA |
Function to use TopologyGSA method on microarray or RNA-Seq data |