Check a gene signature's classification performance against random signatures, permuted data, and known signatures.


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Documentation for package ‘SigCheck’ version 1.0.2

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SigCheck-package Check a gene signature's classification performance against random signatures, permuted data, and known signatures.
knownSignatures Previously identified gene signatures for use in 'sigCheckKnown'
nkiResults Precomputed list of results for a call to 'sigCheck' using the 'breastCancerNKI' dataset.
resultsNKI Previously identified gene signatures for use in 'sigCheckKnown'
SigCheck Check a gene signature's classification performance against random signatures, permuted data, and known signatures.
sigCheck Check classification potential of a gene signature against randomly selected gene signatures, known gene signatures, and permuted expression sets.
sigCheckClassifier Establish baseline classification performance for a signature
sigCheckKnown Check classification performance of signature against a panel of known gene signatures
sigCheckPermuted Check classification performance of signature on randomly permuted data
sigCheckPlot Plot results of a signature check
sigCheckRandom Check classification performance of signatures composed of randomly selected features