Statistical analysis of Solexa sequencing data


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Documentation for package ‘Rolexa’ version 1.22.0

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BatchAnalysis Batch Analysis
BatchAnalysis-method Batch Analysis
ChannelHistogram Diagnostic plots
ChannelHistogram-method Diagnostic plots
CombinedPlot Diagnostic plots
CombinedPlot-method Diagnostic plots
CombineFastQ SaveResults
CombineFastQ-method SaveResults
CombineReads SaveResults
CombineReads-method SaveResults
DeCorrelateChannels Correct for global correlations and biases
DeCorrelateChannels-method Correct for global correlations and biases
DeCorrelateCycles Correct for global correlations and biases
DeCorrelateCycles-method Correct for global correlations and biases
FilterResults FilterResults
FilterResults-method FilterResults
ForkBatch Multi-threaded Probabilistic Base Calling
OneBatch Multi-threaded Probabilistic Base Calling
OneBatch-method Multi-threaded Probabilistic Base Calling
OptimizeAngle Correct for global correlations and biases
OptimizeAngle-method Correct for global correlations and biases
OptimizeRate Correct for global correlations and biases
OptimizeRate-method Correct for global correlations and biases
PlotCycles Batch Analysis
PlotCycles-method Batch Analysis
QualityBoxPlots Batch Analysis
SaveResults SaveResults
SaveResults-method SaveResults
SeqScore Fit and Plot intensities
SeqScore-method Fit and Plot intensities
TileImage Reconstruct tile image
TileImage-method Reconstruct tile image
TileNormalize Correct for global correlations and biases
TileNormalize-method Correct for global correlations and biases