Reactome Pathway Analysis


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Documentation for package ‘ReactomePA’ version 1.10.1

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ReactomePA-package Reactome Pathway Analysis
ALLEXTID.Reactome ALLEXTID.Reactome
cnetplot cnetplot
DataSet Datasets sample contains a sample of gene IDs.
enrichMap enrichMap
enrichPathway Pathway Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enriched pathways with FDR control.
EXTID2TERMID.Reactome EXTID2TERMID.Reactome
getGeneSet.Reactome getGeneSet.Reactome
gseaplot gseaplot
gsePathway gsePathway
ReactomePA Reactome Pathway Analysis
TERM2NAME.Reactome TERM2NAME.Reactome
TERMID2EXTID.Reactome TERMID2EXTID.Reactome
viewPathway viewPathway