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B C D F G H I L M O P S T U V W misc
| bfBuilder_DB | Build Data Packages for Body Fluid Proteomes |
| copyTemplates | Write Help Documents |
| copyTemplates_DB | Write Help Documents |
| createAnnObjs | Creates the AnnObj instances |
| createEmptyDPkg | Parse and Write Data into R Data Packages |
| createSeeds | Creates the AnnObj instances |
| crossBuilder_DB | Build Data Packages for Protein ID Mapping |
| dbschema | Creates the AnnObj instances |
| dbschema-method | Creates the AnnObj instances |
| descriptionInfo | Load packages and data |
| dNameBuilder_DB | Build Data Packages for Mapping between ID and Name |
| fasta2list | Build Data Packages for Protein ID Mapping |
| fileMuncher | Convert Data Format |
| fileMuncher_DB | Convert Data Format |
| get3DIDBuilt | Get the Url and Release information for Diverse Databases |
| get3DIDUrl | Get the Url and Release information for Diverse Databases |
| getALLBuilt | Get the Url and Release information for Diverse Databases |
| getALLUrl | Get the Url and Release information for Diverse Databases |
| getBACELLOBuilt | Get the Url and Release information for Diverse Databases |
| getBACELLOUrl | Get the Url and Release information for Diverse Databases |
| getBaseData | Convert Data Format |
| getBaseParsers | Convert Data Format |
| getDBSUBLOCBuilt | Get the Url and Release information for Diverse Databases |
| getDBSUBLOCUrl | Get the Url and Release information for Diverse Databases |
| getDOMINEBuilt | Get the Url and Release information for Diverse Databases |
| getDOMINEUrl | Get the Url and Release information for Diverse Databases |
| getGENEINTBuilt | Get the Url and Release information for Diverse Databases |
| getGENEINTUrl | Get the Url and Release information for Diverse Databases |
| getGOABuilt | Get the Url and Release information for Diverse Databases |
| getGOAUrl | Get the Url and Release information for Diverse Databases |
| getGOUrl | Get the Url and Release information for Diverse Databases |
| getHOMOLOGENEBuilt | Get the Url and Release information for Diverse Databases |
| getHOMOLOGENEUrl | Get the Url and Release information for Diverse Databases |
| getINPARANOIDBuilt | Get the Url and Release information for Diverse Databases |
| getINPARANOIDUrl | Get the Url and Release information for Diverse Databases |
| getINTACTBuilt | Get the Url and Release information for Diverse Databases |
| getINTACTUrl | Get the Url and Release information for Diverse Databases |
| getINTERPROBuilt | Get the Url and Release information for Diverse Databases |
| getINTERPROUrl | Get the Url and Release information for Diverse Databases |
| getIPIBuilt | Get the Url and Release information for Diverse Databases |
| getIPISQUrl | Get the Url and Release information for Diverse Databases |
| getIPIUrl | Get the Url and Release information for Diverse Databases |
| getKEGGUrl | Get the Url and Release information for Diverse Databases |
| getMPPIBuilt | Get the Url and Release information for Diverse Databases |
| getMPPIUrl | Get the Url and Release information for Diverse Databases |
| getPEPTIDEATLASBuilt | Get the Url and Release information for Diverse Databases |
| getPEPTIDEATLASUrl | Get the Url and Release information for Diverse Databases |
| getPFAMBuilt | Get the Url and Release information for Diverse Databases |
| getPFAMUrl | Get the Url and Release information for Diverse Databases |
| getPROSITENAMEBuilt | Get the Url and Release information for Diverse Databases |
| getPROSITENAMEUrl | Get the Url and Release information for Diverse Databases |
| getREFSEQBuilt | Get the Url and Release information for Diverse Databases |
| getREFSEQSQUrl | Get the Url and Release information for Diverse Databases |
| getREFSEQUrl | Get the Url and Release information for Diverse Databases |
| getRepList | Write Help Documents |
| getSCOPBuilt | Get the Url and Release information for Diverse Databases |
| getSCOPUrl | Get the Url and Release information for Diverse Databases |
| getShortSciName | Get the Url and Release information for Diverse Databases |
| getSPBuilt | Get the Url and Release information for Diverse Databases |
| getSPUrl | Get the Url and Release information for Diverse Databases |
| getSrcBuilt | Get the Url and Release information for Diverse Databases |
| getSrcObjs | Convert Data Format |
| getSrcSQBuilt | Get the Url and Release information for Diverse Databases |
| getSrcSQUrl | Get the Url and Release information for Diverse Databases |
| getSrcUrl | Get the Url and Release information for Diverse Databases |
| getSYSBODYFLUIDBuilt | Get the Url and Release information for Diverse Databases |
| getSYSBODYFLUIDUrl | Get the Url and Release information for Diverse Databases |
| getSYSPTMBuilt | Get the Url and Release information for Diverse Databases |
| getSYSPTMUrl | Get the Url and Release information for Diverse Databases |
| getTREMBLBuilt | Get the Url and Release information for Diverse Databases |
| getTREMBLUrl | Get the Url and Release information for Diverse Databases |
| GOABuilder_DB | Build Data Packages for Proteomics Gene Ontology |
| HomoloGeneBuilder_DB | Build Data Packages for Homolog Protein Group |
| idBlast | Build Data Packages for Protein ID Mapping |
| InParanoidBuilder_DB | Build Data Packages for Ortholog Protein Group |
| intBuilder_DB | Build Data Package for Interaction |
| loadFromUrl | Load Files from a Web Site |
| makeLLDB | Create a Lazy Loading Database for Package Data Files |
| mergeRowByKey | Convert Data Format |
| organism2alias | Get the Url and Release information for Diverse Databases |
| organism2species | Get the Url and Release information for Diverse Databases |
| organism2taxID | Get the Url and Release information for Diverse Databases |
| pBase | Define Class and Object |
| pBaseBuilder_DB | Build Data Packages for Primary Protein Database |
| PeptideAtlasBuilder_DB | Build data package for experimentally identified peptides |
| processData | Convert Data Format |
| pSeqBuilder_DB | Build Data Packages for Query Sequences |
| ptmBuilder_DB | Build Data Packages for Protein Post-Translational Modifications |
| scopBuilder_DB | Build Data Package for Structural Classification of Proteins |
| sourceURLs | Load packages and data |
| speciesNorganism | Get the Url and Release information for Diverse Databases |
| splitEntry | Convert Data Format |
| subcellBuilder_DB | Build Data Package for Protein Subcellular Location |
| taxID2organism | Get the Url and Release information for Diverse Databases |
| taxLists | Load packages and data |
| twoStepSplit | Convert Data Format |
| unzipFile | Load Files from a Web Site |
| validateUrl | Load Files from a Web Site |
| write3DIDData_DB | Parse and Write Data into R Data Packages |
| writeBACELLOData_DB | Parse and Write Data into R Data Packages |
| writeData_DB | Parse and Write Data into R Data Packages |
| writeDBSUBLOCData_DB | Parse and Write Data into R Data Packages |
| writeDescription | Write Help Documents |
| writeDescription_DB | Write Help Documents |
| writeDOMINEData_DB | Parse and Write Data into R Data Packages |
| writeGENEINTData_DB | Parse and Write Data into R Data Packages |
| writeGOAData_DB | Parse and Write Data into R Data Packages |
| writeGOName_DB | Parse and Write Data into R Data Packages |
| writeHomoloGeneData_DB | Parse and Write Data into R Data Packages |
| writeInParanoidData_DB | Parse and Write Data into R Data Packages |
| writeInput | Convert Data Format |
| writeInputBLAST | Convert Data Format |
| writeInputINTERPRO | Convert Data Format |
| writeInputIPI | Convert Data Format |
| writeInputPFAM | Convert Data Format |
| writeInputREFSEQ | Convert Data Format |
| writeInputSP | Convert Data Format |
| writeINTACTData_DB | Parse and Write Data into R Data Packages |
| writeINTERPROName_DB | Parse and Write Data into R Data Packages |
| writeIPIData_DB | Parse and Write Data into R Data Packages |
| writeKEGGName_DB | Parse and Write Data into R Data Packages |
| writeManAnno | Write Help Documents |
| writeManAnno_DB | Write Help Documents |
| writeManMerge | Write Help Documents |
| writeManSQ | Write Help Documents |
| writeMeta_DB | Parse and Write Data into R Data Packages |
| writeMPPIData_DB | Parse and Write Data into R Data Packages |
| writeName_DB | Parse and Write Data into R Data Packages |
| writeOutput | Convert Data Format |
| writePeptideAtlasData_DB | Parse and Write Data into R Data Packages |
| writePFAMName_DB | Parse and Write Data into R Data Packages |
| writeREFSEQData_DB | Parse and Write Data into R Data Packages |
| writeSCOPData_DB | Parse and Write Data into R Data Packages |
| writeSPData_DB | Parse and Write Data into R Data Packages |
| writeSYSBODYFLUIDData_DB | Parse and Write Data into R Data Packages |
| writeSYSPTMData_DB | Parse and Write Data into R Data Packages |
| writeTAXName_DB | Parse and Write Data into R Data Packages |
| .callPerl | Convert Data Format |
| .onLoad | Load packages and data |
| .srcUrls | Get the Url and Release information for Diverse Databases |