batchAdjust | Adjust microarray data for batch effects. |
batchFilter | Remove differential features regarding array batches/lots. |
diffAnalysis | Differential analysis. |
loadGPR | A function to read raw data from gpr files. |
mMsMatrix | Compute a reference minimum M statistic (n1 x n2)-matrix. |
normalizeArrays | Normalize microarray data. |
plotFeatures | Plot intensities of selected features. |
plotFeaturesHeatmap | Plot feature intensities as a heatmap. |
plotMAPlots | Check normalization results with MA plots. |
plotNormMethods | Check normalization results with boxplots. |
preselect | Score and preselect features. |
printFeatures | Print biomarker candidate panel into a table. |
pvaluePlot | Draw a p-value plot. |
selectFeatures | Select features using frequency-based or ensemble feature selection. |
shuffleData | Shuffles class labels to obtain random groups. |
volcanoPlot | Draw a volcano plot. |