allsnps | create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints |
casting | Class '"rsid"' |
clipPCs | transformations of expression data in smlSet instances |
clipPCs-method | transformations of expression data in smlSet instances |
combine-method | Class '"smlSet"' |
dropMonomorphies | Filter genotype contents of an smlSet according to certain SNP allele frequency features. |
exprs-method | Class '"smlSet"' |
externalize | create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints |
genesym | Class '"rsid"' |
genesym-class | Class '"rsid"' |
genesym-method | Class '"rsid"' |
getSS | construct an smlSet instance from existing resources |
GTFfilter | Filter genotype contents of an smlSet according to certain SNP allele frequency features. |
MAFfilter | Filter genotype contents of an smlSet according to certain SNP allele frequency features. |
make_smlSet | construct an smlSet instance from existing resources |
nsFilter-method | Class '"smlSet"' |
permEx | Class '"smlSet"' |
permEx-method | Class '"smlSet"' |
plot_EvG | display the association between expression values and genotypes in an smlSet instance |
plot_EvG-method | display the association between expression values and genotypes in an smlSet instance |
probeId | Class '"rsid"' |
probeId-class | Class '"rsid"' |
probeId-method | Class '"rsid"' |
regressOut | transformations of expression data in smlSet instances |
rsid | Class '"rsid"' |
rsid-class | Class '"rsid"' |
rsid-method | Class '"rsid"' |
smList | Class '"smlSet"' |
smList-method | Class '"smlSet"' |
smlSet-class | Class '"smlSet"' |
[-method | Class '"smlSet"' |